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  5. lcl|VRMN01000016.1_cds_KAA8491051.1_9808

lcl|VRMN01000016.1_cds_KAA8491051.1_9808 (KAA8491051)


Aliases : KAA8491051

Description : 60S ribosomal export protein NMD3


Gene families : OG_01_0001599 (OrthoFinder) Phylogenetic Tree(s): OG0001599_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000016.1_cds_KAA8491051.1_9808
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
PTI_22G00570.1 No alias Nmd3, N-terminal [Interproscan]. 0.03 OrthoFinder
Sro84_g044850.1 Contig220.g2618 Ribosomal export protein NMD3 0.02 OrthoFinder
SymbC1.scaffold1841.1 1841.1 Nmd3, N-terminal [Interproscan]. 0.05 OrthoFinder
TP07G05980.1 No alias Nmd3, N-terminal [Interproscan]. 0.02 OrthoFinder
XM_003063141.1 MicpuC2_22366, 22366 Nmd3, N-terminal [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000667.1_cds_GFH13918.1_8395 HaLaN_09884, GFH13918 60S ribosomal export protein NMD3 0.03 OrthoFinder
lcl|BLLF01001171.1_cds_GFH17585.1_12062 HaLaN_14247, GFH17585 60S ribosomal export protein NMD3 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR007064 Nmd3_N 36 265
No external refs found!