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  5. lcl|VRMN01000016.1_cds_KAA8491013.1_9770

lcl|VRMN01000016.1_cds_KAA8491013.1_9770 (KAA8491013)


Aliases : KAA8491013

Description : Hypothetical protein


Gene families : OG_01_0001103 (OrthoFinder) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000016.1_cds_KAA8491013.1_9770
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000004.1_cds_KAA8494733.1_3263 KAA8494733 Retrovirus-related Pol polyprotein from transposon 0.15 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494243.1_4107 KAA8494243 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493479.1_4241 KAA8493479 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493483.1_4245 KAA8493483 Transposon Ty1-BL Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493209.1_9510 KAA8493209 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493429.1_9730 KAA8493429 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490720.1_5976 KAA8490720 Transposon Ty2-DR1 Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490669.1_4711 KAA8490669 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490613.1_5712 KAA8490613 Hypothetical protein 0.21 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490624.1_5723 KAA8490624 Transposon Ty1-GR2 Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490576.1_6049 KAA8490576 Copia protein 0.08 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490308.1_2436 KAA8490308 Transposon Ty4-J Gag-Pol polyprotein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!