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  5. lcl|VRMN01000015.1_cds_KAA8491195.1_5823

lcl|VRMN01000015.1_cds_KAA8491195.1_5823 (KAA8491195)


Aliases : KAA8491195

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000015.1_cds_KAA8491195.1_5823
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496418.1_147 KAA8496418 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497384.1_1113 KAA8497384 Retrotransposon gag domain [Interproscan]. 0.14 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493219.1_9520 KAA8493219 Zinc finger, CCHC-type; Retroviral aspartyl protease... 0.03 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493353.1_9654 KAA8493353 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493086.1_2822 KAA8493086 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493090.1_2826 KAA8493090 Retrotransposon gag domain [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492392.1_9085 KAA8492392 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491348.1_2349 KAA8491348 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491349.1_2350 KAA8491349 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 117 204
No external refs found!