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  5. lcl|VRMN01000015.1_cds_KAA8491192.1_5820

lcl|VRMN01000015.1_cds_KAA8491192.1_5820 (KAA8491192)


Aliases : KAA8491192

Description : 40S ribosomal protein S17


Gene families : OG_01_0002798 (OrthoFinder) Phylogenetic Tree(s): OG0002798_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: lcl|VRMN01000015.1_cds_KAA8491192.1_5820
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cre12.g498250 30793608, RPS17 Protein biosynthesis.cytosolic ribosome.small subunit... 0.16 OrthoFinder
Cz02g24100.t1 No alias Ribosomal protein S17e [Interproscan]. 0.11 OrthoFinder
Dusal.0462s00007.1 33197488 Ribosomal protein S17e [Interproscan]. 0.06 OrthoFinder
EOD21818 No alias Ribosomal protein S17e [Interproscan]. 0.03 OrthoFinder
EOD28935 No alias Putative 40S ribosomal protein S17 [Ensembl]. 0.02 OrthoFinder
OT_04G05050.1 No alias Ribosomal protein S17e [Interproscan]. 0.12 OrthoFinder
PTI_05G01130.1 No alias Ribosomal protein S17e [Interproscan]. 0.07 OrthoFinder
Sro13_g009690.1 Contig337.g4510 40S ribosomal protein S17 0.2 OrthoFinder
SymbC1.scaffold3580.7 3580.7 Ribosomal protein S17e [Interproscan]. 0.05 OrthoFinder
TP16G00420.1 No alias Ribosomal protein S17e [Interproscan]. 0.19 OrthoFinder
Transcript_contig_80128 80128 Ribosomal protein S17e [Interproscan]. 0.04 OrthoFinder
Vocar.0006s0265.1 32893973 Ribosomal protein S17e [Interproscan]. 0.08 OrthoFinder
XM_002504075.1 MICPUN_76945, 76945 Ribosomal protein S17e [Interproscan]. 0.14 OrthoFinder
XM_003059599.1 MicpuC2_34073, 34073 Ribosomal protein S17e [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01003084.1_cds_GFH26294.1_20771 HaLaN_24421, GFH26294 Ribosomal protein S17e [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56597.1_9573 PRW56597 40S ribosomal S17 isoform A 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR001210 Ribosomal_S17e 1 120
No external refs found!