lcl|VRMN01000014.1_cds_KAA8491401.1_2402 (KAA8491401)

Aliases : KAA8491401

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000014.1_cds_KAA8491401.1_2402
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498183.1_7136	KAA8498183	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494765.1_3295	KAA8494765	Transposon Ty3-I Gag-Pol polyprotein	0.02	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490612.1_5711	KAA8490612	Transposon Ty3-I Gag-Pol polyprotein	0.08	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490532.1_5898	KAA8490532	Transposon Ty3-I Gag-Pol polyprotein	0.17	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Enrichment
BP	GO:0006310	DNA recombination	IEP	Enrichment
BP	GO:0006313	transposition, DNA-mediated	IEP	Enrichment
BP	GO:0032196	transposition	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041588	Integrase_H2C2	985	1043
IPR001878	Znf_CCHC	231	247
IPR001584	Integrase_cat-core	1064	1173
IPR041373	RT_RNaseH	805	904
IPR005162	Retrotrans_gag_dom	67	160
IPR000477	RT_dom	553	711

External Links

No external refs found!