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  5. lcl|VRMN01000014.1_cds_KAA8491366.1_2367

lcl|VRMN01000014.1_cds_KAA8491366.1_2367 (KAA8491366)


Aliases : KAA8491366

Description : DNA repair helicase XPD


Gene families : OG_01_0002565 (OrthoFinder) Phylogenetic Tree(s): OG0002565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000014.1_cds_KAA8491366.1_2367
Cluster HCCA: Cluster_76


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006664 glycolipid metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
BP GO:0009247 glycolipid biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0019627 urea metabolic process IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Enrichment
BP GO:0043419 urea catabolic process IEP Enrichment
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP Enrichment
BP GO:0043605 cellular amide catabolic process IEP Enrichment
BP GO:0046467 membrane lipid biosynthetic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0071941 nitrogen cycle metabolic process IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 711 883
IPR010643 HBB 446 596
IPR010614 DEAD_2 207 432
No external refs found!