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  5. lcl|VRMN01000014.1_cds_KAA8491362.1_2363

lcl|VRMN01000014.1_cds_KAA8491362.1_2363 (KAA8491362)


Aliases : KAA8491362

Description : Copia protein


Gene families : OG_01_0003607 (OrthoFinder) Phylogenetic Tree(s): OG0003607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000014.1_cds_KAA8491362.1_2363
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498187.1_7140 KAA8498187 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498188.1_7141 KAA8498188 Copia protein 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494621.1_3151 KAA8494621 Retrotransposon gag domain [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494623.1_3153 KAA8494623 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494625.1_3155 KAA8494625 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494228.1_4092 KAA8494228 Hypothetical protein 0.01 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493470.1_4232 KAA8493470 Retrotransposon gag domain [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493471.1_4233 KAA8493471 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493660.1_4422 KAA8493660 Copia protein 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491336.1_2337 KAA8491336 Copia protein 0.11 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004806 triglyceride lipase activity IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 199 291
IPR013103 RVT_2 642 856
No external refs found!