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  5. lcl|VRMN01000014.1_cds_KAA8491336.1_2337

lcl|VRMN01000014.1_cds_KAA8491336.1_2337 (KAA8491336)


Aliases : KAA8491336

Description : Copia protein


Gene families : OG_01_0003607 (OrthoFinder) Phylogenetic Tree(s): OG0003607_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000014.1_cds_KAA8491336.1_2337

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498187.1_7140 KAA8498187 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494621.1_3151 KAA8494621 Retrotransposon gag domain [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494623.1_3153 KAA8494623 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494625.1_3155 KAA8494625 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494228.1_4092 KAA8494228 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493470.1_4232 KAA8493470 Retrotransposon gag domain [Interproscan]. 0.14 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493471.1_4233 KAA8493471 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493660.1_4422 KAA8493660 Copia protein 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493226.1_9527 KAA8493226 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493227.1_9528 KAA8493227 Copia protein 0.02 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491362.1_2363 KAA8491362 Copia protein 0.11 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491363.1_2364 KAA8491363 Retrotransposon gag domain [Interproscan]. 0.11 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 449 541
IPR013103 RVT_2 875 1085
IPR005162 Retrotrans_gag_dom 75 165
No external refs found!