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  5. lcl|VRMN01000013.1_cds_KAA8491440.1_6250

lcl|VRMN01000013.1_cds_KAA8491440.1_6250 (KAA8491440)


Aliases : KAA8491440

Description : Nucleolar RNA helicase 2


Gene families : OG_01_0000947 (OrthoFinder) Phylogenetic Tree(s): OG0000947_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000013.1_cds_KAA8491440.1_6250
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020734.25 tig00020734_g13581.t1 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.01 OrthoFinder
Dusal.0202s00008.1 33191697 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.02 OrthoFinder
OT_05G02140.1 No alias Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.02 OrthoFinder
PTI_09G04100.1 No alias GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.02 OrthoFinder
Sro1581_g283790.1 Contig585.g7354 Dependent RNA helicase 0.01 OrthoFinder
Transcript_contig_56946 56946 Helicase, C-terminal; GUCT; DEAD/DEAH box helicase... 0.03 OrthoFinder
Vocar.0033s0039.1 32886419 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.03 OrthoFinder
XM_002502463.1 MICPUN_58575, 58575 DEAD/DEAH box RNA helicase 0.02 OrthoFinder
lcl|BLLF01000392.1_cds_GFH11311.1_5788 HaLaN_06792, GFH11311 DEAD box RNA helicase CiRH75 0.02 OrthoFinder
lcl|BLLF01002695.1_cds_GFH25028.1_19505 HaLaN_22919, GFH25028 GUCT; Helicase, C-terminal; DEAD/DEAH box helicase... 0.03 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59107.1_6866 PRW59107 DEAD-box ATP-dependent RNA helicase 7 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004399 histidinol dehydrogenase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
BP GO:0006493 protein O-linked glycosylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 119 284
IPR012562 GUCT 529 623
IPR001650 Helicase_C 324 434
No external refs found!