lcl|VRMN01000013.1_cds_KAA8491423.1_6233 (KAA8491423)


Aliases : KAA8491423

Description : Transposable element Tc3 transposase


Gene families : OG_01_0003235 (OrthoFinder) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000013.1_cds_KAA8491423.1_6233
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497595.1_6548 KAA8497595 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496122.1_2120 KAA8496122 Transposable element Tc3 transposase 0.14 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494363.1_2893 KAA8494363 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495201.1_3731 KAA8495201 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493093.1_2829 KAA8493093 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491638.1_5106 KAA8491638 Transposable element Tc3 transposase 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
InterPro domains Description Start Stop
IPR002492 Transposase_Tc1-like 57 106
IPR038717 Tc1-like_DDE_dom 150 269
No external refs found!