1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000013.1_cds_KAA8491414.1_6224

lcl|VRMN01000013.1_cds_KAA8491414.1_6224 (KAA8491414)


Aliases : KAA8491414

Description : Transposon Ty2-B Gag-Pol polyprotein


Gene families : OG_01_0002363 (OrthoFinder) Phylogenetic Tree(s): OG0002363_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000013.1_cds_KAA8491414.1_6224

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000004.1_cds_KAA8494497.1_3027 KAA8494497 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494234.1_4098 KAA8494234 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493087.1_2823 KAA8493087 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8492024.1_5032 KAA8492024 Transposon Ty2-B Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491420.1_6230 KAA8491420 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491150.1_5778 KAA8491150 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490922.1_6125 KAA8490922 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000032.1_cds_KAA8490340.1_5682 KAA8490340 Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 2181 2388
No external refs found!