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  5. lcl|VRMN01000012.1_cds_KAA8491613.1_5081

lcl|VRMN01000012.1_cds_KAA8491613.1_5081 (KAA8491613)


Aliases : KAA8491613

Description : Transposable element Tc3 transposase


Gene families : OG_01_0000753 (OrthoFinder) Phylogenetic Tree(s): OG0000753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000012.1_cds_KAA8491613.1_5081

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497478.1_6431 KAA8497478 Tc3 transposase, DNA binding domain [Interproscan]. 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497536.1_6489 KAA8497536 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497567.1_6520 KAA8497567 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497597.1_6550 KAA8497597 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498132.1_7085 KAA8498132 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498741.1_7694 KAA8498741 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499908.1_8861 KAA8499908 Transposable element Tc3 transposase 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496284.1_13 KAA8496284 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496322.1_51 KAA8496322 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494982.1_3512 KAA8494982 Transposable element Tc3 transposase 0.19 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495120.1_3650 KAA8495120 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495184.1_3714 KAA8495184 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493477.1_4239 KAA8493477 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493666.1_4428 KAA8493666 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493874.1_4636 KAA8493874 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493884.1_4646 KAA8493884 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493390.1_9691 KAA8493390 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492868.1_2604 KAA8492868 Transposable element Tc3 transposase 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492085.1_5268 KAA8492085 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491181.1_5809 KAA8491181 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490752.1_6008 KAA8490752 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490780.1_6036 KAA8490780 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490539.1_5905 KAA8490539 Transposable element Tc3 transposase 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR002492 Transposase_Tc1-like 68 137
IPR038717 Tc1-like_DDE_dom 147 300
IPR025898 Tc3_transposase_DNA-bd_dom 5 52
No external refs found!