lcl|VRMN01000012.1_cds_KAA8491590.1_5058 (KAA8491590)


Aliases : KAA8491590

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000012.1_cds_KAA8491590.1_5058
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Cz07g09130.t1 No alias Retroviral aspartyl protease; Integrase zinc-binding... 0.02 OrthoFinder
Cz07g09140.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz18g14030.t1 No alias Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16187.1_10664 HaLaN_12562, GFH16187 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497479.1_6432 KAA8497479 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497578.1_6531 KAA8497578 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498183.1_7136 KAA8498183 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498184.1_7137 KAA8498184 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.22 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498631.1_7584 KAA8498631 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498720.1_7673 KAA8498720 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498876.1_7829 KAA8498876 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498878.1_7831 KAA8498878 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498879.1_7832 KAA8498879 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499404.1_8357 KAA8499404 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499909.1_8862 KAA8499909 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496450.1_179 KAA8496450 Retrotransposon-derived protein PEG10 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496806.1_535 KAA8496806 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497004.1_733 KAA8497004 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495211.1_1209 KAA8495211 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495320.1_1318 KAA8495320 Retrotransposon-derived protein PEG10 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495820.1_1818 KAA8495820 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495846.1_1844 KAA8495846 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494624.1_3154 KAA8494624 Transposon Ty3-I Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494670.1_3200 KAA8494670 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493809.1_4571 KAA8493809 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493854.1_4616 KAA8493854 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493298.1_9599 KAA8493298 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493461.1_9762 KAA8493461 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492702.1_9395 KAA8492702 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491827.1_4835 KAA8491827 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491424.1_6234 KAA8491424 Transposon Ty3-G Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491407.1_2408 KAA8491407 Transposon Ty3-I Gag-Pol polyprotein 0.17 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491014.1_9771 KAA8491014 Transposon Ty3-I Gag-Pol polyprotein 0.12 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490923.1_6126 KAA8490923 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491004.1_6207 KAA8491004 Hypothetical protein 0.29 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.14 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490584.1_6057 KAA8490584 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490460.1_6406 KAA8490460 Hypothetical protein 0.29 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490464.1_6410 KAA8490464 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490418.1_5041 KAA8490418 Transposon Ty3-G Gag-Pol polyprotein 0.1 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490383.1_3740 KAA8490383 Retrovirus-related Pol polyprotein from transposon 0.07 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490384.1_3741 KAA8490384 Transposon Ty3-I Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000030.1_cds_KAA8490385.1_3742 KAA8490385 Transposon Ty3-G Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000041.1_cds_KAA8490241.1_5205 KAA8490241 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 985 1043
IPR041373 RT_RNaseH 805 904
IPR000477 RT_dom 553 711
IPR005162 Retrotrans_gag_dom 67 160
IPR001584 Integrase_cat-core 1064 1173
IPR001878 Znf_CCHC 230 247
No external refs found!