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  5. lcl|VRMN01000011.1_cds_KAA8491996.1_5004

lcl|VRMN01000011.1_cds_KAA8491996.1_5004 (KAA8491996)


Aliases : KAA8491996

Description : Coatomer subunit alpha


Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491996.1_5004
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.152 tig00000144_g9146.t1 Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Cre13.g565850 30784724, COPA1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder
Cz02g40250.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro669_g184560.1 Contig2091.g17828 Coatomer subunit alpha 0.05 OrthoFinder
Vocar.0028s0031.1 32895618 WD40 repeat; Coatomer, alpha subunit, C-terminal;... 0.02 OrthoFinder
lcl|BLLF01001654.1_cds_GFH20541.1_15018 HaLaN_17680, GFH20541 Coatomer subunit alpha 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58160.1_7595 PRW58160 Coatomer subunit alpha-1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
CC GO:0030126 COPI vesicle coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004176 ATP-dependent peptidase activity IEP Enrichment
MF GO:0004576 oligosaccharyl transferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016843 amine-lyase activity IEP Enrichment
MF GO:0016844 strictosidine synthase activity IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 409 811
IPR010714 Coatomer_asu_C 885 1291
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 260 295
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 217 250
No external refs found!