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  5. lcl|VRMN01000011.1_cds_KAA8491987.1_4995

lcl|VRMN01000011.1_cds_KAA8491987.1_4995 (KAA8491987)


Aliases : KAA8491987

Description : Pol polyprotein


Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491987.1_4995
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498070.1_7023 KAA8498070 Copia protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498096.1_7049 KAA8498096 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498655.1_7608 KAA8498655 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496290.1_19 KAA8496290 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497464.1_1193 KAA8497464 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495231.1_1229 KAA8495231 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495709.1_1707 KAA8495709 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496246.1_2244 KAA8496246 Copia protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494542.1_3072 KAA8494542 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493322.1_9623 KAA8493322 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491889.1_4897 KAA8491889 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491988.1_4996 KAA8491988 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491561.1_6371 KAA8491561 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491582.1_6392 KAA8491582 Copia protein 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491269.1_2270 KAA8491269 Putative mitochondrial protein 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491287.1_2288 KAA8491287 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491360.1_2361 KAA8491360 Hypothetical protein 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 524 621
IPR005162 Retrotrans_gag_dom 123 211
No external refs found!