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  5. lcl|VRMN01000011.1_cds_KAA8491938.1_4946

lcl|VRMN01000011.1_cds_KAA8491938.1_4946 (KAA8491938)


Aliases : KAA8491938

Description : Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic


Gene families : OG_01_0001072 (OrthoFinder) Phylogenetic Tree(s): OG0001072_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491938.1_4946
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021181.14 tig00021181_g19317.t1 RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder
Cpa|evm.model.tig00021720.14 tig00021720_g23184.t1 RNA processing.organelle machineries.ribonuclease... 0.03 OrthoFinder
Cre10.g440050 30790885 RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder
PTI_01G10420.1 No alias NAD-dependent epimerase/dehydratase [Interproscan]. 0.03 OrthoFinder
Sro2140_g316190.1 Contig3280.g25801 NAD dependent epimerase/dehydratase family 0.02 OrthoFinder
TP02G04440.1 No alias NAD-dependent epimerase/dehydratase [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1288.1 32884505 NAD-dependent epimerase/dehydratase [Interproscan]. 0.01 OrthoFinder
Vocar.0024s0021.1 32890256 NAD-dependent epimerase/dehydratase [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000502.1_cds_GFH12422.1_6899 HaLaN_08111, GFH12422 Epimerase domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61578.1_650 PRW61578 Chloroplast stem-loop binding of 41 kDa chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
BP GO:0016125 sterol metabolic process IEP Enrichment
BP GO:0016126 sterol biosynthetic process IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0032958 inositol phosphate biosynthetic process IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 51 207
No external refs found!