1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000011.1_cds_KAA8491931.1_4939

lcl|VRMN01000011.1_cds_KAA8491931.1_4939 (KAA8491931)


Aliases : KAA8491931

Description : TRNA pseudouridine synthase B


Gene families : OG_01_0000746 (OrthoFinder) Phylogenetic Tree(s): OG0000746_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491931.1_4939
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
Cre16.g665750 30777670, RAA2 Trans-splicing factor Raa2, chloroplastic... 0.01 OrthoFinder
Sro9_g007670.1 Contig4120.g31535 Pseudouridine synthase B 0.01 OrthoFinder
XM_003058711.1 MicpuC2_16788, 16788 Pseudouridine synthase II, N-terminal; tRNA... 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005507 copper ion binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0017186 peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase IEP Enrichment
BP GO:0018199 peptidyl-glutamine modification IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
InterPro domains Description Start Stop
IPR002501 PsdUridine_synth_N 109 245
No external refs found!