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  5. lcl|VRMN01000011.1_cds_KAA8491905.1_4913

lcl|VRMN01000011.1_cds_KAA8491905.1_4913 (KAA8491905)


Aliases : KAA8491905

Description : 40S ribosomal protein S25-4


Gene families : OG_01_0003067 (OrthoFinder) Phylogenetic Tree(s): OG0003067_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491905.1_4913
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000037.5 tig00000037_g10072.t1 40S ribosomal protein S25-4 OS=Arabidopsis thaliana 0.12 OrthoFinder
Cre08.g382500 30773860, RPS25 Protein biosynthesis.cytosolic ribosome.small subunit... 0.37 OrthoFinder
Cz13g18280.t1 No alias Ribosomal protein S25 [Interproscan]. 0.23 OrthoFinder
Dusal.0757s00001.1 33202066 Ribosomal protein S25 [Interproscan]. 0.07 OrthoFinder
EOD07030 No alias Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
EOD36091 No alias Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
OT_12G01700.1 No alias Ribosomal protein S25 [Interproscan]. 0.13 OrthoFinder
PTI_11G01840.1 No alias Ribosomal protein S25 [Interproscan]. 0.19 OrthoFinder
Sro1033_g233710.1 Contig1396.g12845 40S ribosomal protein S25 0.38 OrthoFinder
SymbC1.scaffold3325.6 3325.6 Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
TP14G02860.1 No alias Ribosomal protein S25 [Interproscan]. 0.34 OrthoFinder
Vocar.0042s0061.1 32892074 Ribosomal protein S25 [Interproscan]. 0.29 OrthoFinder
XM_002503070.1 MICPUN_82663, 82663 Ribosomal protein S25 [Interproscan]. 0.25 OrthoFinder
XM_003061087.1 MicpuC2_28202, 28202 Ribosomal protein S25 [Interproscan]. 0.14 OrthoFinder
lcl|BLLF01006863.1_cds_GFH32610.1_27087 HaLaN_31855, GFH32610 Ribosomal protein S25 [Interproscan]. 0.05 OrthoFinder
lcl|LHPG02000022.1_cds_PRW20673.1_5214 PRW20673 40S ribosomal S25-3 0.16 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004977 Ribosomal_S25 6 105
No external refs found!