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Aliases : KAA8491874
Description : 60S ribosomal protein L28
Gene families : OG_01_0004517 (OrthoFinder) Phylogenetic Tree(s): OG0004517_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: lcl|VRMN01000011.1_cds_KAA8491874.1_4882 | |
| Cluster | HCCA: Cluster_9 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020710.93 | tig00020710_g13357.t1 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.25 | OrthoFinder | |
| Cre11.g467578 | 30775702 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.29 | OrthoFinder | |
| Cz16g20220.t1 | No alias | Ribosomal L28e/Mak16 [Interproscan]. | 0.22 | OrthoFinder | |
| Dusal.0187s00004.1 | 33194139 | Ribosomal L28e/Mak16 [Interproscan]. | 0.08 | OrthoFinder | |
| EOD16362 | No alias | Ribosomal L28e/Mak16 [Interproscan]. | 0.13 | OrthoFinder | |
| PTI_03G02910.1 | No alias | Ribosomal L28e/Mak16 [Interproscan]. | 0.29 | OrthoFinder | |
| Sro827_g207890.1 | Contig2896.g23094 | 60S ribosomal protein L28 | 0.3 | OrthoFinder | |
| SymbC1.scaffold11278.1 | 11278.1 | Ribosomal L28e/Mak16 [Interproscan]. | 0.02 | OrthoFinder | |
| SymbC1.scaffold3066.8 | 3066.8 | Ribosomal L28e/Mak16 [Interproscan]. | 0.06 | OrthoFinder | |
| TP01G10070.1 | No alias | Ribosomal L28e/Mak16 [Interproscan]. | 0.34 | OrthoFinder | |
| Transcript_contig_79258 | 79258 | Ribosomal L28e/Mak16 [Interproscan]. | 0.05 | OrthoFinder | |
| Vocar.0014s0223.1 | 32888380 | Ribosomal L28e/Mak16 [Interproscan]. | 0.18 | OrthoFinder | |
| XM_002509130.1 | MICPUN_52633, 52633 | Ribosomal L28e/Mak16 [Interproscan]. | 0.21 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Enrichment |
| MF | GO:0005198 | structural molecule activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| CC | GO:0005840 | ribosome | IEP | Enrichment |
| BP | GO:0006412 | translation | IEP | Enrichment |
| BP | GO:0006518 | peptide metabolic process | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| MF | GO:0008097 | 5S rRNA binding | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| BP | GO:0008152 | metabolic process | IEP | Enrichment |
| BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| MF | GO:0015298 | solute:cation antiporter activity | IEP | Enrichment |
| MF | GO:0015299 | solute:proton antiporter activity | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019843 | rRNA binding | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| MF | GO:0022853 | active ion transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0043604 | amide biosynthetic process | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044238 | primary metabolic process | IEP | Enrichment |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
| CC | GO:0110165 | cellular anatomical entity | IEP | Enrichment |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Enrichment |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR029004 | L28e/Mak16 | 5 | 118 |
| No external refs found! |