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  5. lcl|VRMN01000011.1_cds_KAA8491832.1_4840

lcl|VRMN01000011.1_cds_KAA8491832.1_4840 (KAA8491832)


Aliases : KAA8491832

Description : GTPase Obg


Gene families : OG_01_0000470 (OrthoFinder) Phylogenetic Tree(s): OG0000470_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000011.1_cds_KAA8491832.1_4840
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020780.16 tig00020780_g13769.t1 Probable GTP-binding protein OBGC1, chloroplastic... 0.02 OrthoFinder
Cre10.g433100 30789840 Probable GTP-binding protein OBGC1, chloroplastic... 0.06 OrthoFinder
Cz10g16250.t1 No alias GTP1/OBG domain; GTP binding domain; GTP-binding protein... 0.03 OrthoFinder
Dusal.0341s00003.1 33193241 GTP-binding protein OBG, C-terminal; GTP binding domain;... 0.03 OrthoFinder
OT_07G04130.1 No alias GTP binding domain; GTP1/OBG domain [Interproscan]. 0.05 OrthoFinder
TP06G07710.1 No alias GTP binding domain; GTP1/OBG domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_57944 57944 GTP binding domain; GTP1/OBG domain [Interproscan]. 0.06 OrthoFinder
XM_002499910.1 MICPUN_78980, 78980 GTP-binding protein OBG, C-terminal; GTP binding domain;... 0.04 OrthoFinder
XM_003055157.1 MicpuC2_43864, 43864 GTP-binding protein OBG, C-terminal; GTP binding domain;... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072330 monocarboxylic acid biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR006169 GTP1_OBG_dom 208 363
IPR006073 GTP-bd 366 500
IPR002492 Transposase_Tc1-like 755 819
IPR015349 OCT_dom 613 673
No external refs found!