lcl|VRMN01000011.1_cds_KAA8491745.1_4753 (KAA8491745)

Aliases : KAA8491745

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94

Gene families : OG_01_0005146 (OrthoFinder) Phylogenetic Tree(s): OG0005146_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000011.1_cds_KAA8491745.1_4753
Cluster	HCCA: Cluster_54

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497592.1_6545	KAA8497592	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.09	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8498721.1_7674	KAA8498721	Copia protein	0.08	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496304.1_33	KAA8496304	Copia protein	0.05	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493396.1_9697	KAA8493396	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493397.1_9698	KAA8493397	Hypothetical protein	0.04	OrthoFinder
lcl\|VRMN01000007.1_cds_KAA8493398.1_9699	KAA8493398	Copia protein	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	1165	1401
IPR001878	Znf_CCHC	292	308

External Links

No external refs found!