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  5. lcl|VRMN01000010.1_cds_KAA8492299.1_5482

lcl|VRMN01000010.1_cds_KAA8492299.1_5482 (KAA8492299)


Aliases : KAA8492299

Description : Transposable element Tcb2 transposase


Gene families : OG_01_0001332 (OrthoFinder) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492299.1_5482
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497488.1_6441 KAA8497488 Transposable element Tcb2 transposase 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494427.1_2957 KAA8494427 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490656.1_4698 KAA8490656 Transposable element Tc1 transposase 0.06 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490573.1_6046 KAA8490573 Transposable element Tc3 transposase 0.18 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490404.1_6093 KAA8490404 Transposable element Tcb2 transposase 0.11 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490361.1_5751 KAA8490361 Transposable element Tc1 transposase 0.08 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490362.1_5752 KAA8490362 Transposable element Tc3 transposase 0.1 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490259.1_2418 KAA8490259 Transposable element Tc3 transposase 0.11 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 157 311
No external refs found!