lcl|VRMN01000010.1_cds_KAA8492298.1_5481 (KAA8492298)

Aliases : KAA8492298

Description : Transposon Ty3-I Gag-Pol polyprotein

Gene families : OG_01_0003588 (OrthoFinder) Phylogenetic Tree(s): OG0003588_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000010.1_cds_KAA8492298.1_5481
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000002.1_cds_KAA8496915.1_644	KAA8496915	Hypothetical protein	0.06	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495362.1_1360	KAA8495362	Transposon Ty3-I Gag-Pol polyprotein	0.07	OrthoFinder
lcl\|VRMN01000017.1_cds_KAA8491006.1_6209	KAA8491006	Transposon Ty3-I Gag-Pol polyprotein	0.12	OrthoFinder
lcl\|VRMN01000021.1_cds_KAA8490611.1_5710	KAA8490611	Transposon Ty3-I Gag-Pol polyprotein	0.1	OrthoFinder
lcl\|VRMN01000026.1_cds_KAA8490462.1_6408	KAA8490462	Transposon Ty3-I Gag-Pol polyprotein	0.12	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	589	749
IPR041588	Integrase_H2C2	1062	1121
IPR023780	Chromo_domain	1435	1482
IPR001584	Integrase_cat-core	1137	1247
IPR041373	RT_RNaseH	861	961

External Links

No external refs found!