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  5. lcl|VRMN01000010.1_cds_KAA8492296.1_5479

lcl|VRMN01000010.1_cds_KAA8492296.1_5479 (KAA8492296)


Aliases : KAA8492296

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0005146 (OrthoFinder) Phylogenetic Tree(s): OG0005146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492296.1_5479
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8498721.1_7674 KAA8498721 Copia protein 0.14 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496304.1_33 KAA8496304 Copia protein 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495214.1_1212 KAA8495214 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493396.1_9697 KAA8493396 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493397.1_9698 KAA8493397 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493398.1_9699 KAA8493398 Copia protein 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 292 308
IPR013103 RVT_2 1165 1401
No external refs found!