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  5. lcl|VRMN01000010.1_cds_KAA8492270.1_5453

lcl|VRMN01000010.1_cds_KAA8492270.1_5453 (KAA8492270)


Aliases : KAA8492270

Description : Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492270.1_5453
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 tig00000113_g5693.t1 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.05 OrthoFinder
Cpa|evm.model.tig00000796.23 tig00000796_g4246.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.05 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.05 OrthoFinder
Cre07.g352251 30775310 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.04 OrthoFinder
Cz05g31260.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.08 OrthoFinder
Dusal.0072s00015.1 33199066 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
EOD22735 No alias Helicase-associated domain; DEAD/DEAH box helicase... 0.05 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.02 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
OT_01G03120.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
OT_04G02170.1 No alias S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... 0.03 OrthoFinder
PTI_05G02970.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.11 OrthoFinder
PTI_08G03610.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
PTI_28G00240.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.13 OrthoFinder
SymbC1.scaffold2592.10 2592.10 Ankyrin repeat-containing domain; DnaJ domain [Interproscan]. 0.01 OrthoFinder
TP13G03460.1 No alias Domain of unknown function DUF1605; Helicase-associated... 0.04 OrthoFinder
Transcript_contig_55987 55987 Helicase-associated domain; Helicase, C-terminal; Domain... 0.04 OrthoFinder
Transcript_contig_67459 67459 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Vocar.0005s0082.1 32884001 Domain of unknown function DUF1605; Helicase,... 0.02 OrthoFinder
Vocar.0017s0041.1 32891358 Domain of unknown function DUF1605; Helicase,... 0.04 OrthoFinder
XM_002502185.1 MICPUN_81845, 81845 Helicase, C-terminal; Helicase-associated domain; Domain... 0.07 OrthoFinder
XM_003057993.1 MicpuC2_57106, 57106 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003057994.1 MicpuC2_57107, 57107 AAA+ ATPase domain; S1 domain [Interproscan]. 0.02 OrthoFinder
XM_003059475.1 MicpuC2_18184, 18184 AAA+ ATPase domain; Helicase, C-terminal;... 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.1 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.05 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20509.1_5500 PRW20509 Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003689 DNA clamp loader activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005663 DNA replication factor C complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 402 535
IPR007502 Helicase-assoc_dom 598 687
IPR011709 DUF1605 762 837
No external refs found!