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  5. lcl|VRMN01000010.1_cds_KAA8492081.1_5264

lcl|VRMN01000010.1_cds_KAA8492081.1_5264 (KAA8492081)


Aliases : KAA8492081

Description : Transposable element Tc3 transposase


Gene families : OG_01_0001874 (OrthoFinder) Phylogenetic Tree(s): OG0001874_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492081.1_5264
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499347.1_8300 KAA8499347 Transposable element Tc3 transposase 0.08 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496539.1_268 KAA8496539 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495124.1_3654 KAA8495124 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493856.1_4618 KAA8493856 Transposable element Tc3 transposase 0.13 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492318.1_5501 KAA8492318 Transposable element Tc3 transposase 0.12 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491309.1_2310 KAA8491309 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490747.1_6003 KAA8490747 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490543.1_5909 KAA8490543 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000024.1_cds_KAA8490520.1_4670 KAA8490520 Transposable element Tc3 transposase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0018142 protein-DNA covalent cross-linking IEP Enrichment
BP GO:0018143 nucleic acid-protein covalent cross-linking IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR025898 Tc3_transposase_DNA-bd_dom 3 46
IPR038717 Tc1-like_DDE_dom 147 296
No external refs found!