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  5. lcl|VRMN01000010.1_cds_KAA8492076.1_5259

lcl|VRMN01000010.1_cds_KAA8492076.1_5259 (KAA8492076)


Aliases : KAA8492076

Description : Copia protein


Gene families : OG_01_0002924 (OrthoFinder) Phylogenetic Tree(s): OG0002924_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000010.1_cds_KAA8492076.1_5259
Cluster HCCA: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000002.1_cds_KAA8496360.1_89 KAA8496360 Copia protein 0.08 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495210.1_1208 KAA8495210 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.2 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494660.1_3190 KAA8494660 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493869.1_4631 KAA8493869 Copia protein 0.09 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493870.1_4632 KAA8493870 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491350.1_2351 KAA8491350 Copia protein 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491351.1_2352 KAA8491351 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491245.1_5873 KAA8491245 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491246.1_5874 KAA8491246 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490757.1_6013 KAA8490757 Copia protein 0.2 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 825 1064
No external refs found!