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  5. lcl|VRMN01000009.1_cds_KAA8492526.1_9219

lcl|VRMN01000009.1_cds_KAA8492526.1_9219 (KAA8492526)


Aliases : KAA8492526

Description : Ribosome biogenesis protein bms1


Gene families : OG_01_0003800 (OrthoFinder) Phylogenetic Tree(s): OG0003800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000009.1_cds_KAA8492526.1_9219
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000478.23 tig00000478_g1271.t1 No description available 0.04 OrthoFinder
Cre10.g445600 30790575 No description available 0.08 OrthoFinder
Cz08g02110.t1 No alias AARP2CN; Ribosome biogenesis protein BMS1/TSR1,... 0.06 OrthoFinder
Dusal.0139s00020.1 33194202 Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.02 OrthoFinder
OT_12G02080.1 No alias AARP2CN; Ribosome biogenesis protein BMS1/TSR1,... 0.05 OrthoFinder
PTI_01G05840.1 No alias Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.04 OrthoFinder
Sro363_g126850.1 Contig698.g8124 Ribosome biogenesis protein BMS1 0.06 OrthoFinder
Transcript_contig_57614 57614 ATPase, AAA-type, core; AARP2CN [Interproscan]. 0.01 OrthoFinder
Vocar.0026s0056.1 32892545 Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.02 OrthoFinder
XM_003054849.1 MicpuC2_30726, 30726 Ribosome biogenesis protein BMS1/TSR1, C-terminal;... 0.06 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR007034 BMS1_TSR1_C 822 1111
IPR012948 AARP2CN 263 354
No external refs found!