lcl|VRMN01000009.1_cds_KAA8492406.1_9099 (KAA8492406)

Aliases : KAA8492406

Description : Transposable element Tc3 transposase

Gene families : OG_01_0001874 (OrthoFinder) Phylogenetic Tree(s): OG0001874_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000009.1_cds_KAA8492406.1_9099
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8497593.1_6546	KAA8497593	Transposable element Tc3 transposase	0.11	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499365.1_8318	KAA8499365	Transposable element Tc3 transposase	0.06	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499655.1_8608	KAA8499655	Transposable element Tc3 transposase	0.07	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496442.1_171	KAA8496442	Transposable element Tc3 transposase	0.08	OrthoFinder
lcl\|VRMN01000002.1_cds_KAA8496539.1_268	KAA8496539	Transposable element Tc3 transposase	0.04	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8495124.1_3654	KAA8495124	Transposable element Tc3 transposase	0.04	OrthoFinder
lcl\|VRMN01000023.1_cds_KAA8490543.1_5909	KAA8490543	Transposable element Tc3 transposase	0.12	OrthoFinder
lcl\|VRMN01000024.1_cds_KAA8490520.1_4670	KAA8490520	Transposable element Tc3 transposase	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025898	Tc3_transposase_DNA-bd_dom	3	46
IPR038717	Tc1-like_DDE_dom	147	296

External Links

No external refs found!