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  5. lcl|VRMN01000008.1_cds_KAA8493103.1_2839

lcl|VRMN01000008.1_cds_KAA8493103.1_2839 (KAA8493103)


Aliases : KAA8493103

Description : Retrotransposable element


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000008.1_cds_KAA8493103.1_2839
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499399.1_8352 KAA8499399 Reverse transcriptase domain [Interproscan]. 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496272.1_1 KAA8496272 Retrotransposable element 0.07 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497467.1_1196 KAA8497467 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496268.1_2266 KAA8496268 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8496271.1_2269 KAA8496271 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 KAA8494359 Retrovirus-related Pol polyprotein from type-1... 0.1 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490705.1_5961 KAA8490705 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490574.1_6047 KAA8490574 RNA-directed DNA polymerase from mobile element jockey 0.09 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 KAA8490413 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490409.1_6098 KAA8490409 Reverse transcriptase domain [Interproscan]. 0.12 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.04 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490235.1_6102 KAA8490235 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490227.1_6079 KAA8490227 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 KAA8490222 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.12 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 KAA8490211 Retrotransposable element 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 590 784
No external refs found!