lcl|VRMN01000008.1_cds_KAA8493093.1_2829 (KAA8493093)


Aliases : KAA8493093

Description : Transposable element Tc3 transposase


Gene families : OG_01_0003235 (OrthoFinder) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000008.1_cds_KAA8493093.1_2829
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499722.1_8675 KAA8499722 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496314.1_43 KAA8496314 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494363.1_2893 KAA8494363 Transposable element Tc3 transposase 0.09 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495201.1_3731 KAA8495201 Transposable element Tc3 transposase 0.21 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491638.1_5106 KAA8491638 Transposable element Tc3 transposase 0.11 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491423.1_6233 KAA8491423 Transposable element Tc3 transposase 0.05 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8490931.1_6134 KAA8490931 Transposable element Tc3 transposase 0.04 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490417.1_5040 KAA8490417 Transposable element Tc3 transposase 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006313 transposition, DNA-mediated IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002492 Transposase_Tc1-like 72 136
IPR038717 Tc1-like_DDE_dom 180 299
No external refs found!