1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000008.1_cds_KAA8493090.1_2826

lcl|VRMN01000008.1_cds_KAA8493090.1_2826 (KAA8493090)


Aliases : KAA8493090

Description : Retrotransposon gag domain [Interproscan].


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000008.1_cds_KAA8493090.1_2826
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497516.1_6469 KAA8497516 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497529.1_6482 KAA8497529 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498171.1_7124 KAA8498171 Copia protein 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498455.1_7408 KAA8498455 gag-polyprotein putative aspartyl protease;... 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498719.1_7672 KAA8498719 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499353.1_8306 KAA8499353 Copia protein 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496418.1_147 KAA8496418 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494477.1_3007 KAA8494477 Copia protein 0.1 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494496.1_3026 KAA8494496 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493138.1_9439 KAA8493138 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493353.1_9654 KAA8493353 Hypothetical protein 0.16 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493354.1_9655 KAA8493354 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493355.1_9656 KAA8493355 Copia protein 0.04 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492969.1_2705 KAA8492969 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.1 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492392.1_9085 KAA8492392 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.14 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492641.1_9334 KAA8492641 Copia protein 0.04 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491347.1_2348 KAA8491347 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.17 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491348.1_2349 KAA8491348 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491349.1_2350 KAA8491349 Hypothetical protein 0.11 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491195.1_5823 KAA8491195 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491237.1_5865 KAA8491237 Copia protein 0.1 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491238.1_5866 KAA8491238 Integrase, catalytic core; Zinc finger, CCHC-type [Interproscan]. 0.1 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491248.1_5876 KAA8491248 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491003.1_6206 KAA8491003 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490753.1_6009 KAA8490753 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490617.1_5716 KAA8490617 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490459.1_6405 KAA8490459 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490364.1_5754 KAA8490364 Hypothetical protein 0.1 OrthoFinder
lcl|VRMN01000036.1_cds_KAA8490272.1_5942 KAA8490272 Integrase, catalytic core; gag-polyprotein putative... 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 168 254
No external refs found!