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  5. lcl|VRMN01000008.1_cds_KAA8493028.1_2764

lcl|VRMN01000008.1_cds_KAA8493028.1_2764 (KAA8493028)


Aliases : KAA8493028

Description : Regulator of nonsense transcripts 1


Gene families : OG_01_0000282 (OrthoFinder) Phylogenetic Tree(s): OG0000282_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000008.1_cds_KAA8493028.1_2764
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cre03.g150350 30786728 Regulator of nonsense transcripts 1 homolog... 0.02 OrthoFinder
OT_08G03080.1 No alias DNA2/NAM7 helicase-like, AAA domain; DNA2/NAM7 helicase,... 0.03 OrthoFinder
Sro1794_g297930.1 Contig4702.g34971 Regulator of nonsense transcripts 1 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004392 heme oxygenase (decyclizing) activity IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
BP GO:0006535 cysteine biosynthetic process from serine IEP Enrichment
BP GO:0006563 L-serine metabolic process IEP Enrichment
BP GO:0006788 heme oxidation IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
MF GO:0009001 serine O-acetyltransferase activity IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009070 serine family amino acid biosynthetic process IEP Enrichment
MF GO:0016412 serine O-acyltransferase activity IEP Enrichment
MF GO:0016413 O-acetyltransferase activity IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
BP GO:0019344 cysteine biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 616 820
IPR041677 DNA2/NAM7_AAA_11 387 607
No external refs found!