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  5. lcl|VRMN01000008.1_cds_KAA8492735.1_2471

lcl|VRMN01000008.1_cds_KAA8492735.1_2471 (KAA8492735)


Aliases : KAA8492735

Description : 40S ribosomal protein S9-1


Gene families : OG_01_0003059 (OrthoFinder) Phylogenetic Tree(s): OG0003059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000008.1_cds_KAA8492735.1_2471
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000826.24 tig00000826_g4593.t1 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.11 OrthoFinder
Cre08.g359750 30774125, RPS9 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.28 OrthoFinder
Cz12g07160.t1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.13 OrthoFinder
Dusal.0155s00009.1 33194778 Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.06 OrthoFinder
EOD14804 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.03 OrthoFinder
EOD28183 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.02 OrthoFinder
OT_09G02520.1 No alias RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.05 OrthoFinder
PTI_07G00150.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.22 OrthoFinder
Sro789_g202650.1 Contig1895.g16481 40S ribosomal protein S9 0.24 OrthoFinder
TP04G02460.1 No alias Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.25 OrthoFinder
Transcript_contig_79937 79937 RNA-binding S4 domain [Interproscan]. 0.04 OrthoFinder
Vocar.0064s0040.1 32897709 Ribosomal protein S4/S9, N-terminal; RNA-binding S4... 0.05 OrthoFinder
XM_002500563.1 MICPUN_93744, 93744 RNA-binding S4 domain; Ribosomal protein S4/S9,... 0.24 OrthoFinder
XM_003056738.1 MicpuC2_49506, 49506 RNA-binding S4 domain [Interproscan]. 0.11 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58729.1_7293 PRW58729 Fidgetin 1 0.17 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0019843 rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006382 adenosine to inosine editing IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016553 base conversion or substitution editing IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 12 62
IPR002942 S4_RNA-bd 107 150
No external refs found!