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  5. lcl|VRMN01000007.1_cds_KAA8493461.1_9762

lcl|VRMN01000007.1_cds_KAA8493461.1_9762 (KAA8493461)


Aliases : KAA8493461

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000071 (OrthoFinder) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493461.1_9762
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
Cz07g09130.t1 No alias Retroviral aspartyl protease; Integrase zinc-binding... 0.02 OrthoFinder
Cz07g09140.t1 No alias Hypothetical protein 0.03 OrthoFinder
Cz18g14030.t1 No alias Reverse transcriptase domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000958.1_cds_GFH16187.1_10664 HaLaN_12562, GFH16187 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498182.1_7135 KAA8498182 Hypothetical protein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498184.1_7137 KAA8498184 Transposon Ty3-I Gag-Pol polyprotein 0.07 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498457.1_7410 KAA8498457 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498876.1_7829 KAA8498876 Transposon Ty3-I Gag-Pol polyprotein 0.03 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499405.1_8358 KAA8499405 Retrotransposon-derived protein PEG10 0.06 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495213.1_1211 KAA8495213 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494765.1_3295 KAA8494765 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493487.1_4249 KAA8493487 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8493085.1_2821 KAA8493085 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491827.1_4835 KAA8491827 Transposon Ty3-I Gag-Pol polyprotein 0.04 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491590.1_5058 KAA8491590 Transposon Ty3-I Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491004.1_6207 KAA8491004 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490612.1_5711 KAA8490612 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490460.1_6406 KAA8490460 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000026.1_cds_KAA8490464.1_6410 KAA8490464 Transposon Ty3-I Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490418.1_5041 KAA8490418 Transposon Ty3-G Gag-Pol polyprotein 0.09 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490236.1_6103 KAA8490236 Transposon Ty3-G Gag-Pol polyprotein 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041373 RT_RNaseH 805 904
IPR001878 Znf_CCHC 231 247
IPR041588 Integrase_H2C2 985 1043
IPR001584 Integrase_cat-core 1064 1173
IPR005162 Retrotrans_gag_dom 67 160
IPR000477 RT_dom 553 711
No external refs found!