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  4. Sequence
  5. lcl|VRMN01000007.1_cds_KAA8493457.1_9758

lcl|VRMN01000007.1_cds_KAA8493457.1_9758 (KAA8493457)


Aliases : KAA8493457

Description : Hypothetical protein


Gene families : OG_01_0000233 (OrthoFinder) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493457.1_9758
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499399.1_8352 KAA8499399 Reverse transcriptase domain [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497470.1_1199 KAA8497470 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494359.1_2889 KAA8494359 Retrovirus-related Pol polyprotein from type-1... 0.06 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492711.1_9404 KAA8492711 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492026.1_5209 KAA8492026 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490703.1_5959 KAA8490703 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490705.1_5961 KAA8490705 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490574.1_6047 KAA8490574 RNA-directed DNA polymerase from mobile element jockey 0.05 OrthoFinder
lcl|VRMN01000028.1_cds_KAA8490413.1_5036 KAA8490413 Retrotransposable element 0.03 OrthoFinder
lcl|VRMN01000029.1_cds_KAA8490408.1_6097 KAA8490408 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000034.1_cds_KAA8490314.1_2442 KAA8490314 Retrotransposable element 0.06 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490257.1_2416 KAA8490257 Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000038.1_cds_KAA8490261.1_2420 KAA8490261 Hypothetical protein 0.09 OrthoFinder
lcl|VRMN01000040.1_cds_KAA8490248.1_2447 KAA8490248 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490237.1_6104 KAA8490237 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000042.1_cds_KAA8490239.1_6106 KAA8490239 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490232.1_2422 KAA8490232 Retrotransposable element 0.05 OrthoFinder
lcl|VRMN01000043.1_cds_KAA8490234.1_2424 KAA8490234 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000044.1_cds_KAA8490228.1_6080 KAA8490228 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490219.1_4683 KAA8490219 Reverse transcriptase domain [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490222.1_4686 KAA8490222 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000045.1_cds_KAA8490223.1_4687 KAA8490223 RNA-directed DNA polymerase from mobile element jockey 0.03 OrthoFinder
lcl|VRMN01000046.1_cds_KAA8490214.1_5699 KAA8490214 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490210.1_4223 KAA8490210 Hypothetical protein 0.03 OrthoFinder
lcl|VRMN01000047.1_cds_KAA8490211.1_4224 KAA8490211 Retrotransposable element 0.03 OrthoFinder
lcl|VRMN01000049.1_cds_KAA8490206.1_5939 KAA8490206 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006644 phospholipid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008654 phospholipid biosynthetic process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!