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  5. lcl|VRMN01000007.1_cds_KAA8493452.1_9753

lcl|VRMN01000007.1_cds_KAA8493452.1_9753 (KAA8493452)


Aliases : KAA8493452

Description : Copia protein


Gene families : OG_01_0000588 (OrthoFinder) Phylogenetic Tree(s): OG0000588_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493452.1_9753
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497751.1_6704 KAA8497751 Copia protein 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497911.1_6864 KAA8497911 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499337.1_8290 KAA8499337 Copia protein 0.03 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496290.1_19 KAA8496290 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497458.1_1187 KAA8497458 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.12 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495709.1_1707 KAA8495709 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493322.1_9623 KAA8493322 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491889.1_4897 KAA8491889 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491900.1_4908 KAA8491900 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491988.1_4996 KAA8491988 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491561.1_6371 KAA8491561 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.03 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491270.1_2271 KAA8491270 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491285.1_2286 KAA8491285 Copia protein 0.1 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 526 621
IPR005162 Retrotrans_gag_dom 123 211
IPR013103 RVT_2 928 1158
No external refs found!