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  5. lcl|VRMN01000007.1_cds_KAA8493449.1_9750

lcl|VRMN01000007.1_cds_KAA8493449.1_9750 (KAA8493449)


Aliases : KAA8493449

Description : 20S-pre-rRNA D-site endonuclease nob1


Gene families : OG_01_0002649 (OrthoFinder) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493449.1_9750
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre01.g031750 30788745 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cz06g29250.t1 No alias Ribonuclease, PIN domain [Interproscan]. 0.03 OrthoFinder
Cz06g30010.t1 No alias Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.02 OrthoFinder
EOD32208 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.02 OrthoFinder
OT_06G04030.1 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.05 OrthoFinder
PTI_01G03580.1 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.03 OrthoFinder
Sro400_g135140.1 Contig1256.g11757 20S-pre-rRNA D-site endonuclease NOB1 0.03 OrthoFinder
TP07G06410.1 No alias Nin one binding (NOB1) Zn-ribbon-like; Ribonuclease, PIN... 0.04 OrthoFinder
Transcript_contig_89518 89518 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.05 OrthoFinder
XM_002508093.1 MICPUN_60565, 60565 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.04 OrthoFinder
XM_003061944.1 MicpuC2_3608, 3608 Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000175.1_cds_GFH08649.1_3126 HaLaN_03641, GFH08649 Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33098.1_3423 PRW33098 20S-pre-rRNA D-site endonuclease nob1-like 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 10 77
IPR014881 NOB1_Zn-bd 319 390
No external refs found!