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  5. lcl|VRMN01000007.1_cds_KAA8493398.1_9699

lcl|VRMN01000007.1_cds_KAA8493398.1_9699 (KAA8493398)


Aliases : KAA8493398

Description : Copia protein


Gene families : OG_01_0005146 (OrthoFinder) Phylogenetic Tree(s): OG0005146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493398.1_9699
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497592.1_6545 KAA8497592 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496304.1_33 KAA8496304 Copia protein 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495214.1_1212 KAA8495214 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492703.1_9396 KAA8492703 Transposon Ty1-H Gag-Pol polyprotein 0.05 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492705.1_9398 KAA8492705 Hypothetical protein 0.08 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492296.1_5479 KAA8492296 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491745.1_4753 KAA8491745 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 190 426
No external refs found!