lcl|VRMN01000007.1_cds_KAA8493392.1_9693 (KAA8493392)


Aliases : KAA8493392

Description : Hypothetical protein


Gene families : OG_01_0000420 (OrthoFinder) Phylogenetic Tree(s): OG0000420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493392.1_9693
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497516.1_6469 KAA8497516 Hypothetical protein 0.17 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496418.1_147 KAA8496418 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.09 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493138.1_9439 KAA8493138 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.22 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491347.1_2348 KAA8491347 Retrotransposon gag domain; Zinc finger, CCHC-type... 0.06 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491348.1_2349 KAA8491348 Hypothetical protein 0.07 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491349.1_2350 KAA8491349 Hypothetical protein 0.04 OrthoFinder
lcl|VRMN01000017.1_cds_KAA8491003.1_6206 KAA8491003 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000019.1_cds_KAA8490788.1_6044 KAA8490788 Retrotransposon gag domain [Interproscan]. 0.05 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490617.1_5716 KAA8490617 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment

No InterPro domains available for this sequence

No external refs found!