1. Home
  2. Species
  3. Porphyridium purpureum
  4. Sequence
  5. lcl|VRMN01000007.1_cds_KAA8493391.1_9692

lcl|VRMN01000007.1_cds_KAA8493391.1_9692 (KAA8493391)


Aliases : KAA8493391

Description : Transposon Ty3-I Gag-Pol polyprotein


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493391.1_9692
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497473.1_6426 KAA8497473 Transposon Ty3-I Gag-Pol polyprotein 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494622.1_3152 KAA8494622 Transposon Ty3-I Gag-Pol polyprotein 0.11 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490538.1_5904 KAA8490538 Transposon Ty3-I Gag-Pol polyprotein 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 508 566
IPR000477 RT_dom 32 192
IPR041373 RT_RNaseH 302 401
IPR001584 Integrase_cat-core 581 692
No external refs found!