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  5. lcl|VRMN01000007.1_cds_KAA8493381.1_9682

lcl|VRMN01000007.1_cds_KAA8493381.1_9682 (KAA8493381)


Aliases : KAA8493381

Description : Transducin beta-like protein 3


Gene families : OG_01_0000612 (OrthoFinder) Phylogenetic Tree(s): OG0000612_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493381.1_9682
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre07.g344050 30774587 Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder
Cz04g09230.t1 No alias WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.07 OrthoFinder
EOD29254 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.02 OrthoFinder
OT_08G01420.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.06 OrthoFinder
PTI_06G04180.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.08 OrthoFinder
Sro1027_g232980.1 Contig109.g1249 Transducin beta-like protein 3 0.03 OrthoFinder
TP04G06150.1 No alias Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_57084 57084 Small-subunit processome, Utp13; WD40 repeat [Interproscan]. 0.05 OrthoFinder
Transcript_contig_78416 78416 Thioredoxin domain; Phosphoadenosine phosphosulphate... 0.01 OrthoFinder
Vocar.0011s0002.1 32895390 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.02 OrthoFinder
XM_002503015.1 MICPUN_83206, 83206 WD40 repeat; Small-subunit processome, Utp13 [Interproscan]. 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
CC GO:0032040 small-subunit processome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0015939 pantothenate metabolic process IEP Enrichment
BP GO:0015940 pantothenate biosynthetic process IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 557 594
IPR001680 WD40_repeat 307 329
IPR001680 WD40_repeat 668 704
IPR001680 WD40_repeat 631 661
IPR001680 WD40_repeat 708 747
IPR013934 SSU_processome_Utp13 814 966
No external refs found!