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  5. lcl|VRMN01000007.1_cds_KAA8493216.1_9517

lcl|VRMN01000007.1_cds_KAA8493216.1_9517 (KAA8493216)


Aliases : KAA8493216

Description : Transposable element Tc1 transposase


Gene families : OG_01_0001332 (OrthoFinder) Phylogenetic Tree(s): OG0001332_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493216.1_9517
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000003.1_cds_KAA8495318.1_1316 KAA8495318 Transposable element Tc1 transposase 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494361.1_2891 KAA8494361 Transposable element Tcb2 transposase 0.09 OrthoFinder
lcl|VRMN01000012.1_cds_KAA8491640.1_5108 KAA8491640 Transposable element Tc3 transposase 0.17 OrthoFinder
lcl|VRMN01000014.1_cds_KAA8491408.1_2409 KAA8491408 Transposable element Tc1 transposase 0.11 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490361.1_5751 KAA8490361 Transposable element Tc1 transposase 0.05 OrthoFinder
lcl|VRMN01000031.1_cds_KAA8490362.1_5752 KAA8490362 Transposable element Tc3 transposase 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR038717 Tc1-like_DDE_dom 3 114
No external refs found!