lcl|VRMN01000007.1_cds_KAA8493209.1_9510 (KAA8493209)


Aliases : KAA8493209

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94


Gene families : OG_01_0001103 (OrthoFinder) Phylogenetic Tree(s): OG0001103_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493209.1_9510
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8499385.1_8338 KAA8499385 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.11 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494373.1_2903 KAA8494373 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493479.1_4241 KAA8493479 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493483.1_4245 KAA8493483 Transposon Ty1-BL Gag-Pol polyprotein 0.06 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491013.1_9770 KAA8491013 Hypothetical protein 0.06 OrthoFinder
lcl|VRMN01000020.1_cds_KAA8490669.1_4711 KAA8490669 Hypothetical protein 0.24 OrthoFinder
lcl|VRMN01000021.1_cds_KAA8490624.1_5723 KAA8490624 Transposon Ty1-GR2 Gag-Pol polyprotein 0.25 OrthoFinder
lcl|VRMN01000022.1_cds_KAA8490576.1_6049 KAA8490576 Copia protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 959 1172
No external refs found!