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  5. lcl|VRMN01000007.1_cds_KAA8493132.1_9433

lcl|VRMN01000007.1_cds_KAA8493132.1_9433 (KAA8493132)


Aliases : KAA8493132

Description : Putative RNA pseudouridine synthase


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: lcl|VRMN01000007.1_cds_KAA8493132.1_9433
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000025.21 tig00000025_g7931.t1 RNA pseudouridine synthase 4, mitochondrial... 0.02 OrthoFinder
Cpa|evm.model.tig00021318.52 tig00021318_g20172.t1 RNA pseudouridine synthase 2, chloroplastic... 0.02 OrthoFinder
EOD14048 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
EOD14502 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
EOD17411 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
OT_15G01480.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
XM_002503232.1 MICPUN_101067, 101067 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01003665.1_cds_GFH27901.1_22378 HaLaN_26292, GFH27901 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 182 356
No external refs found!