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  5. lcl|VRMN01000006.1_cds_KAA8493859.1_4621

lcl|VRMN01000006.1_cds_KAA8493859.1_4621 (KAA8493859)


Aliases : KAA8493859

Description : gag-polypeptide of LTR copia-type [Interproscan].


Gene families : OG_01_0007399 (OrthoFinder) Phylogenetic Tree(s): OG0007399_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493859.1_4621
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000001.1_cds_KAA8497537.1_6490 KAA8497537 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498391.1_7344 KAA8498391 Copia protein 0.05 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491550.1_6360 KAA8491550 Retrovirus-related Pol polyprotein from transposon TNT 1-94 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006313 transposition, DNA-mediated IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0032196 transposition IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment

No InterPro domains available for this sequence

No external refs found!