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  5. lcl|VRMN01000006.1_cds_KAA8493814.1_4576

lcl|VRMN01000006.1_cds_KAA8493814.1_4576 (KAA8493814)


Aliases : KAA8493814

Description : 60S ribosomal protein L10a


Gene families : OG_01_0002677 (OrthoFinder) Phylogenetic Tree(s): OG0002677_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493814.1_4576
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020697.31 tig00020697_g13103.t1 60S ribosomal protein L10a OS=Oryza sativa subsp. japonica 0.09 OrthoFinder
Cre02.g101350 30786442, RPL10a Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 OrthoFinder
Cz10g29200.t1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.16 OrthoFinder
Dusal.0201s00008.1 33186098 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.09 OrthoFinder
EOD05341 No alias 60S ribosomal protein L10a [Ensembl]. 0.14 OrthoFinder
EOD37118 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.14 OrthoFinder
OT_04G02990.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.13 OrthoFinder
PTI_12G00410.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.19 OrthoFinder
Sro1425_g271560.1 Contig1471.g13484 60S ribosomal protein L10a (Fragment) 0.22 OrthoFinder
SymbC1.scaffold235.6 235.6 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.03 OrthoFinder
TP06G01830.1 No alias Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.13 OrthoFinder
Transcript_contig_79909 79909 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.04 OrthoFinder
Vocar.0036s0111.1 32892173 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.09 OrthoFinder
XM_002504810.1 MICPUN_95416, 95416 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.17 OrthoFinder
XM_003060702.1 MicpuC2_49658, 49658 Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. 0.08 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56513.1_9881 PRW56513 60S ribosomal L10a-1 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000469 cleavage involved in rRNA processing IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004618 phosphoglycerate kinase activity IEP Enrichment
MF GO:0004664 prephenate dehydratase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006558 L-phenylalanine metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009094 L-phenylalanine biosynthetic process IEP Enrichment
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0030076 light-harvesting complex IEP Enrichment
CC GO:0030089 phycobilisome IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Enrichment
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Enrichment
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR028364 Ribosomal_L1/biogenesis 23 210
No external refs found!