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  5. lcl|VRMN01000006.1_cds_KAA8493760.1_4522

lcl|VRMN01000006.1_cds_KAA8493760.1_4522 (KAA8493760)


Aliases : KAA8493760

Description : MRNA turnover protein 4-like


Gene families : OG_01_0003015 (OrthoFinder) Phylogenetic Tree(s): OG0003015_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493760.1_4522
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre06.g261700 30779803 No description available 0.08 OrthoFinder
Cz09g30160.t1 No alias Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.07 OrthoFinder
EOD15493 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.01 OrthoFinder
EOD42017 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.05 OrthoFinder
OT_17G00690.1 No alias Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.13 OrthoFinder
PTI_07G02090.1 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.03 OrthoFinder
Sro1552_g281880.1 Contig3671.g28371 Turnover protein 4 homolog 0.12 OrthoFinder
Sro2516_g329950.1 Contig716.g8270 Turnover protein 4 homolog 0.12 OrthoFinder
TP16G01380.1 No alias 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.07 OrthoFinder
Transcript_contig_57106 57106 Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.05 OrthoFinder
XM_002508822.1 MICPUN_85635, 85635 Ribosomal protein L10P; 60S ribosomal protein L10P,... 0.07 OrthoFinder
XM_003063924.1 MicpuC2_30129, 30129 60S ribosomal protein L10P, insertion domain; Ribosomal... 0.07 OrthoFinder
lcl|BLLF01002268.1_cds_GFH23419.1_17896 HaLaN_21028, GFH23419 Ribosome assembly factor mrt4 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45636.1_1527 PRW45636 MRNA turnover 4-like protein 0.11 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0004055 argininosuccinate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006526 arginine biosynthetic process IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 21 122
IPR040637 RL10P_insert 128 199
No external refs found!