lcl|VRMN01000006.1_cds_KAA8493660.1_4422 (KAA8493660)

Aliases : KAA8493660

Description : Copia protein

Gene families : OG_01_0003607 (OrthoFinder) Phylogenetic Tree(s): OG0003607_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: lcl\|VRMN01000006.1_cds_KAA8493660.1_4422
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
lcl\|VRMN01000001.1_cds_KAA8498188.1_7141	KAA8498188	Copia protein	0.08	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494621.1_3151	KAA8494621	Retrotransposon gag domain [Interproscan].	0.11	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494623.1_3153	KAA8494623	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.08	OrthoFinder
lcl\|VRMN01000004.1_cds_KAA8494625.1_3155	KAA8494625	Retrovirus-related Pol polyprotein from transposon TNT 1-94	0.08	OrthoFinder
lcl\|VRMN01000006.1_cds_KAA8493470.1_4232	KAA8493470	Retrotransposon gag domain [Interproscan].	0.14	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491336.1_2337	KAA8491336	Copia protein	0.08	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491362.1_2363	KAA8491362	Copia protein	0.04	OrthoFinder
lcl\|VRMN01000014.1_cds_KAA8491363.1_2364	KAA8491363	Retrotransposon gag domain [Interproscan].	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	853	1078
IPR001584	Integrase_cat-core	442	533
IPR005162	Retrotrans_gag_dom	80	170

External Links

No external refs found!