lcl|VRMN01000006.1_cds_KAA8493577.1_4339 (KAA8493577)


Aliases : KAA8493577

Description : Ubiquitin receptor RAD23b


Gene families : OG_01_0001949 (OrthoFinder) Phylogenetic Tree(s): OG0001949_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: lcl|VRMN01000006.1_cds_KAA8493577.1_4339
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cre08.g366400 30773546 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.04 OrthoFinder
Dusal.0083s00005.1 33186064 XPC-binding domain; Ubiquitin-associated domain;... 0.01 OrthoFinder
OT_10G01880.1 No alias Ubiquitin-associated domain; Ubiquitin-like domain;... 0.01 OrthoFinder
PTI_02G03870.1 No alias Ubiquitin-like domain; Ubiquitin-associated domain;... 0.03 OrthoFinder
Sro1843_g301140.1 Contig4701.g34962 XPC-binding domain 0.04 OrthoFinder
Sro1843_g301150.1 Contig4701.g34963 Ubiquitin receptor 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR015360 XPC-bd 273 328
IPR015940 UBA 373 412
IPR015940 UBA 167 202
IPR000626 Ubiquitin-like_dom 4 71
No external refs found!